PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF016200040CFD_t1
Common NameTRAES_3BF016200040CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 388aa    MW: 43065.7 Da    PI: 10.3799
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF016200040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.83.2e-2119118199
                              EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                              ffkvl     +k+ rl +p kf++++        +g ke s+  tle +sgr+W+v +  r++ +++++t+GW +Fv+++ L+e +
  TRAES3BF016200040CFD_t1  19 FFKVL--IGDFKK-RLKIPPKFCKHIpweasrkaKGLKEASMAATLEGPSGRTWQVVI--RRTAEGTFFTAGWAKFVQDQALRELE 99 
                              66666..555555.6********888********6666799*****************..************************** PP

                              EEEEEE-SSSEE..EEEEE-S CS
                       B3  79 fvvFkldgrsefelvvkvfrk 99 
                              f+vF++dg ++f    +vf+k
  TRAES3BF016200040CFD_t1 100 FLVFRHDGGTSF--AAMVFDK 118
                              *****9987777..7777766 PP

2B350.83.1e-16288374598
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              +++ +v  s ++++p  f ++h   ++e+++++l+d+ g+ W   +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef
  TRAES3BF016200040CFD_t1 288 MSTMHVYYSFMMRFPTGFSRQHL--PREKTEMVLRDPGGKAWAALYI-PGTRDR--LSRGWCAFARGNCLEEGDCCVFELVGAAEF 368
                              6788999999*********9995..345679***************4.444445..9***********************997777 PP

                              ..EEEEE- CS
                       B3  91 elvvkvfr 98 
                                +v+vfr
  TRAES3BF016200040CFD_t1 369 --RVHVFR 374
                              ..999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2114121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2016123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71716119IPR003340B3 DNA binding domain
CDDcd100176.39E-1917117No hitNo description
SMARTSM010193.3E-1119119IPR003340B3 DNA binding domain
PfamPF023623.0E-1819117IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-23277374IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-21277374IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-23282374No hitNo description
SMARTSM010192.0E-9284376IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437284376IPR003340B3 DNA binding domain
PfamPF023626.0E-15286374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPDTERQSPW ASVERRPHFF KVLIGDFKKR LKIPPKFCKH IPWEASRKAK GLKEASMAAT  60
LEGPSGRTWQ VVIRRTAEGT FFTAGWAKFV QDQALRELEF LVFRHDGGTS FAAMVFDKSA  120
CEREDLLLAG DAPRPRRKRG RPRTASRAVD DSAGMELVPY RAPAEQLPQV ACSDRMPESD  180
KSNGSAGHPG PMKAEAGAGE LPLCLIAPPP SESGQLPPGR LPAGTKDGCA VKTRSIHVDL  240
AAASIPPSVR KYNGYVSRRR PVASAERQRA MELARAFRSS LPYCVIRMST MHVYYSFMMR  300
FPTGFSRQHL PREKTEMVLR DPGGKAWAAL YIPGTRDRLS RGWCAFARGN CLEEGDCCVF  360
ELVGAAEFRV HVFRVVEPAV PAVRLRLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754273.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A077RU240.0A0A077RU24_WHEAT; Uncharacterized protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]